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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27439703_27443597_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27439703 - 27443597
Intron Length:
3895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
ACTGCTTTTACT
Flanking Amino Acid:
VVNKEEMRRKEIRSEDIKTC
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
82
30.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
33.4
-1.9
2.9
41
44.9
Minor BPS
58.7
0.35
1.8
73.68
43.4

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361