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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27443727_27444494_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27443727 - 27444494
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGCTGG
5'SS Class:
major
3'SS Sequence:
TTCAACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TGTAATTCAACT
Flanking Amino Acid:
QCDKKKLLDEDEKTHNAVVE
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
51.7
47.7
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
80.5
0.69
0.9
77
36.7
Minor 5ss
41.7
-0.9
3.1
46.9
48.5
Minor BPS
54.7
0.23
1.8
75.21
41

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361