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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27444653_27446725_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27444653 - 27446725
Intron Length:
2073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAAAA
U12 Branch Point Sequence:
AAACCCCAAACT
Flanking Amino Acid:
KYNPAIIDFELQPIHEILRR
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
49.7
-0
1.1
57
36.4
Major PPT
72.7
0.51
1
68
37.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
48.4
-0
2
67.39
42.4

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361