About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27446949_27448554_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27446949 - 27448554
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TATGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TCTTACTCAATA
Flanking Amino Acid:
GHACEQSKRPGTGTSGRWSC
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
83.9
0.76
0.8
81
36.2
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
61.7
0.36
1.7
72.62
39.5

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361