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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27455400_27456732_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27455400 - 27456732
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TATCCTGACACT
Flanking Amino Acid:
GTACEITNRRDTAINGNWGC
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
41.7
-0.5
2.5
65.93
44.9

Associated Gene:

Gene:
C8B
Ensembl Gene ID:
ENSAPLG00000008037
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035122
27455248 - 27471212
15965
ENSAPLT00000008390
27455248 - 27471212
15965