Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27456802_27457982_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27456802 - 27457982

Intron Length:

1181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGGA

5'SS Class:

major

3'SS Sequence:

TGCTTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGAAAT

U12 Branch Point Sequence:

AAGTCTGTAATC

Flanking Amino Acid:

CQGNGTPFMKGTECECLCPV

Intron Amino Acid Position:

518

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

66.1

40.1

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

80.3

0.68

0.9

76.9

37.4

Minor 5ss

28.4

-2.5

3.5

38.3

46.7

Minor BPS

51.4

0.02

61.32

38.7

Associated Gene:

Gene:

C8B

Ensembl Gene ID:

ENSAPLG00000008037

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035122

27455248 - 27471212

15965

ENSAPLT00000008390

27455248 - 27471212

15965