Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27461007_27462235_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27461007 - 27462235

Intron Length:

1229

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTATTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

ATTTTATTAAAA

Flanking Amino Acid:

VLNSNELQKAGYTLSDVQTC

Intron Amino Acid Position:

369

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.2

34.9

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

0.5

1.1

76.1

36.9

Minor 5ss

31.9

-2.1

3.3

41.7

44.9

Minor BPS

64.5

0.45

1.7

76.25

33.9

Associated Gene:

Gene:

C8B

Ensembl Gene ID:

ENSAPLG00000008037

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035122

27455248 - 27471212

15965

ENSAPLT00000008390

27455248 - 27471212

15965