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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27468662_27469207_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27468662 - 27469207
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTCGT
5'SS Class:
major
3'SS Sequence:
TATTTCATCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATCACA
Flanking Amino Acid:
EKAQPGITSTYRFARLEQPS
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
62.1
43.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.9
73.7
35.2
Minor 5ss
33.4
-1.9
3.1
51.2
45.1
Minor BPS
55
0.15
2
73.15
38.5

Associated Gene:

Gene:
C8B
Ensembl Gene ID:
ENSAPLG00000008037
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035122
27455248 - 27471212
15965