About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27469323_27469458_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27469323 - 27469458
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATTCCCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
CATTCCCTACTA
Flanking Amino Acid:
GASAIPARRNGGAPSDGGND
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
67.2
0.39
0.9
59.9
36.4
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
50.9
0.02
2
64.99
41.7

Associated Gene:

Gene:
C8B
Ensembl Gene ID:
ENSAPLG00000008037
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035122
27455248 - 27471212
15965