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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27469613_27470969_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27469613 - 27470969
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTGTTGAATG
Flanking Amino Acid:
TLGFLNVHCFGDGKESMGLG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.7
0.51
1
67.2
42.9
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
50.2
-0.1
1.9
60.63
41.8

Associated Gene:

Gene:
C8B
Ensembl Gene ID:
ENSAPLG00000008037
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035122
27455248 - 27471212
15965
ENSAPLT00000008390
27455248 - 27471212
15965