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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27479882_27489422_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27479882 - 27489422
Intron Length:
9541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTATCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
SPSKSEEQEAEAEPLYAQIN
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
70.8
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.1
0.56
0.9
66.7
39.3
Minor 5ss
33.5
-1.9
2.8
46.6
41.8
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024231
27479837 - 27505503
25667