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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27488487_27489422_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27488487 - 27489422
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTGTATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTCTTGTATT
Flanking Amino Acid:
SPSKSEEQEAPDGSQASSNS
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
70.8
34.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.2
0.63
0.9
70.3
40
Minor 5ss
33.5
-1.9
2.8
46.6
41.8
Minor BPS
56.8
0.3
1.8
77.3
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007959
27488403 - 27516310
27908
ENSAPLT00000045113
27488388 - 27513190
24803
ENSAPLT00000028225
27488403 - 27516310
27908
ENSAPLT00000025649
27479968 - 27512828
32861
ENSAPLT00000022177
27488388 - 27513190
24803