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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27490915_27492137_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27490915 - 27492137
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTTTCTTTATTC
Flanking Amino Acid:
VPFSTAAVPSGYVAMGAVLP
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.8
0.63
1
79.6
32.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
66.1
0.49
1.6
73.5
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007959
27488403 - 27516310
27908
ENSAPLT00000028225
27488403 - 27516310
27908
ENSAPLT00000025649
27479968 - 27512828
32861
ENSAPLT00000024231
27479837 - 27505503
25667
ENSAPLT00000022177
27488388 - 27513190
24803
ENSAPLT00000045113
27488388 - 27513190
24803