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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27492247_27493448_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27492247 - 27493448
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGTGTTTTATT
Flanking Amino Acid:
STPPDVTSPPTPATPGDAFI
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
81.8
31.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76.1
0.59
0.9
70
35.1
Minor 5ss
36.5
-1.5
2.7
46.6
41.8
Minor BPS
52.2
0.15
2.1
74.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025649
27479968 - 27512828
32861
ENSAPLT00000024231
27479837 - 27505503
25667
ENSAPLT00000022177
27488388 - 27513190
24803
ENSAPLT00000045113
27488388 - 27513190
24803
ENSAPLT00000007959
27488403 - 27516310
27908
ENSAPLT00000028225
27488403 - 27516310
27908