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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27493512_27496667_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27493512 - 27496667
Intron Length:
3156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTTACA
Flanking Amino Acid:
IDENLVSVTQAVTQLELFGD
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.6
0.89
0.7
84.1
30.7
Minor 5ss
37
-1.5
3.2
47.6
48
Minor BPS
68.1
0.56
1.6
79.86
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045113
27488388 - 27513190
24803
ENSAPLT00000025649
27479968 - 27512828
32861
ENSAPLT00000024231
27479837 - 27505503
25667
ENSAPLT00000022177
27488388 - 27513190
24803