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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27493512_27505329_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27493512 - 27505329
Intron Length:
11818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTATCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTTACA
Flanking Amino Acid:
YDVPKSQPVSAVTQLELFGD
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.6
0.89
0.7
84.1
30.7
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
68.1
0.56
1.6
79.86
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007959
27488403 - 27516310
27908