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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27496725_27505329_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27496725 - 27505329
Intron Length:
8605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCATGCTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCATAAATC
Flanking Amino Acid:
YDVPKSQPVSLENGNLLLDI
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
79
0.65
0.9
72.2
37.7
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
59.7
0.28
1.9
73.94
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025649
27479968 - 27512828
32861
ENSAPLT00000024231
27479837 - 27505503
25667
ENSAPLT00000022177
27488388 - 27513190
24803
ENSAPLT00000045113
27488388 - 27513190
24803