About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27498692_27505325_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
27498692 - 27505325
Intron Length:
6634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATCTTCA
5'SS Class:
weak_major
3'SS Sequence:
TTCTCACTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TAAGACTGAACC
Flanking Amino Acid:
DVPKSQPVSVREPYSSLRFL
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.2
64
36.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.8
0.58
0.8
74.1
29.7
Minor 5ss
63.4
0.45
1.8
67.4
37.7
Minor BPS
51.7
0.03
1.8
62.91
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028225
27488403 - 27516310
27908