Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27505390_27510065_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27505390 - 27510065

Intron Length:

4676

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAAAAT

5'SS Class:

major

3'SS Sequence:

TTTGTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCGTTTTCATTT

Flanking Amino Acid:

EPETEENIYQVPTSQKKEGV

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

75.8

33.1

Major BPS

100

1.24

0.5

100

Major PPT

89.8

0.89

0.7

84.9

29.9

Minor 5ss

40.6

-1.1

57.1

47.2

Minor BPS

47.5

-0.1

1.7

62.66

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007606

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028225

27488403 - 27516310

27908

ENSAPLT00000007959

27488403 - 27516310

27908