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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27505390_27511377_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27505390 - 27511377
Intron Length:
5988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCGTTTTCATTT
Flanking Amino Acid:
EEDVEDPVYQVPTSQKKEGV
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
100
1.24
0.5
100
0
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
47.5
-0.1
1.7
62.66
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022177
27488388 - 27513190
24803