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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27510132_27511377_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27510132 - 27511377
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
GCTGGTGTAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATCTTTGACT
Flanking Amino Acid:
EEDVEDPVYQYIVFEAGHEP
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
56.6
0.15
1.1
50.2
42.9
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
76.2
0.91
1.1
83.55
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007959
27488403 - 27516310
27908