Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27511417_27512005_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27511417 - 27512005

Intron Length:

589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATGCA

5'SS Class:

major

3'SS Sequence:

CTCTTTGCTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TTTGCTTTTACT

Flanking Amino Acid:

DKQCEQAVYQTILEEDVEDP

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

68.6

36.5

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

77.2

0.61

0.8

72.9

Minor 5ss

31.3

-2.1

3.4

41.7

44.9

Minor BPS

69.5

0.7

1.7

87.77

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007606

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022177

27488388 - 27513190

24803

ENSAPLT00000007959

27488403 - 27516310

27908