About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27512126_27512696_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27512126 - 27512696
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCTAGAAAC
Flanking Amino Acid:
RFVAIKTAQAAEPVILDLRD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
47.3
-0.2
1.8
58.52
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007606
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007959
27488403 - 27516310
27908
ENSAPLT00000045113
27488388 - 27513190
24803
ENSAPLT00000028225
27488403 - 27516310
27908
ENSAPLT00000025649
27479968 - 27512828
32861
ENSAPLT00000022177
27488388 - 27513190
24803