Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27566236_27604495_R

Intron Information:

Intron Rank:

151495

Intron Class:

major

Intron Phase:

Intron Coordinates:

27566236 - 27604495

Intron Length:

38260

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGACT

5'SS Class:

major

3'SS Sequence:

TTTTTCTGAGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TTTTTCTGAGCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

68.9

41.6

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

0.67

78.2

34.9

Minor 5ss

33.6

-1.9

3.4

49.6

46.4

Minor BPS

65.8

0.49

1.7

80.11

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029067

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047623

27565254 - 27645127

79874

ENSAPLT00000042510

27565254 - 27645127

79874