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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2796042_2800384_R

Intron Information:

Intron Rank:
136971
Intron Class:
major
Intron Phase:
Intron Coordinates:
2796042 - 2800384
Intron Length:
4343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGATCAC
5'SS Class:
major
3'SS Sequence:
TGGCTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AGACACTCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.1
56.5
42.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
76.1
0.59
0.9
69.7
36.7
Minor 5ss
32
-2.1
3.2
34.7
41.9
Minor BPS
43.1
-0.5
1.9
50.11
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021183
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031573
2794736 - 2800988
6253