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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27987176_27994605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27987176 - 27994605
Intron Length:
7430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TATGTATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATGAGCTTGATT
Flanking Amino Acid:
AEHLDRLIPEALKIRERCNC
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.8
0.58
0.9
69.2
40.6
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
52.5
0.16
1.8
69.66
41.8

Associated Gene:

Gene:
OMA1
Ensembl Gene ID:
ENSAPLG00000006406
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006649
27986954 - 28005181
18228