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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27996589_28000520_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27996589 - 28000520
Intron Length:
3932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAAGCATGGAGT
Flanking Amino Acid:
GQWIQSKLQEFMFDRPYSRT
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
95.3
1.02
0.5
91.7
19.4
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
40.6
-0.6
2
52.99
41.6

Associated Gene:

Gene:
OMA1
Ensembl Gene ID:
ENSAPLG00000006406
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006649
27986954 - 28005181
18228
ENSAPLT00000035058
27991513 - 28005058
13546