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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28002722_28003846_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28002722 - 28003846
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATCAATTAATT
Flanking Amino Acid:
RQLSQMEYDMWMEEFKNKML
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
83.3
29.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.3
0.91
0.7
88.7
27.5
Minor 5ss
44
-0.6
3.2
62.3
43.4
Minor BPS
53.7
0.19
1.8
72.03
38

Associated Gene:

Gene:
OMA1
Ensembl Gene ID:
ENSAPLG00000006406
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035058
27991513 - 28005058
13546
ENSAPLT00000006649
27986954 - 28005181
18228