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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28004076_28004526_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28004076 - 28004526
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTCCTAAGCT
Flanking Amino Acid:
AQKLFAIILGRSIRNWWKAL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
58
0.33
2
76.69
45.6

Associated Gene:

Gene:
OMA1
Ensembl Gene ID:
ENSAPLG00000006406
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035058
27991513 - 28005058
13546
ENSAPLT00000006649
27986954 - 28005181
18228