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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28020209_28020327_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28020209 - 28020327
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACATC
5'SS Class:
major
3'SS Sequence:
TCTCTTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTCTTTCAACA
Flanking Amino Acid:
WIIEKYKFCHSSVPMDKIFH
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
71.2
38.9
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
80.3
0.68
0.8
77
30.3
Minor 5ss
49.4
-0
2.6
68.8
42.2
Minor BPS
59
0.28
1.5
68.33
38.3

Associated Gene:

Gene:
MYSM1
Ensembl Gene ID:
ENSAPLG00000006062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032369
28019437 - 28032981
13545
ENSAPLT00000024440
28019437 - 28032981
13545
ENSAPLT00000022200
28019064 - 28033975
14912
ENSAPLT00000006334
28019437 - 28033975
14539