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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28020434_28021672_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28020434 - 28021672
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CAATTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCATGTTCAATT
Flanking Amino Acid:
SDEISSDGSYRLPYKFEVQQ
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
75.7
40.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.9
0.45
1
61.8
42.9
Minor 5ss
40.2
-1.1
2.8
57.6
39.6
Minor BPS
49.7
0.06
1.9
68.4
43.2

Associated Gene:

Gene:
MYSM1
Ensembl Gene ID:
ENSAPLG00000006062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022200
28019064 - 28033975
14912
ENSAPLT00000006334
28019437 - 28033975
14539
ENSAPLT00000032369
28019437 - 28032981
13545
ENSAPLT00000024440
28019437 - 28032981
13545