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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28022311_28022697_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28022311 - 28022697
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ACTTTTTCAACA
Flanking Amino Acid:
RYSEADKIVEVCAAEPCNSL
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
77.9
0.63
0.9
73.9
34.9
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
62.1
0.38
1.5
69.17
37.5

Associated Gene:

Gene:
MYSM1
Ensembl Gene ID:
ENSAPLG00000006062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024440
28019437 - 28032981
13545
ENSAPLT00000022200
28019064 - 28033975
14912
ENSAPLT00000006334
28019437 - 28033975
14539
ENSAPLT00000032369
28019437 - 28032981
13545