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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28022773_28023533_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28022773 - 28023533
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GATATCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACAACTTTAATA
Flanking Amino Acid:
SSEALLIMDLHSHVSMAEVI
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
76.6
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
68.1
0.41
1
63.8
42.3
Minor 5ss
30.5
-2.2
3.2
36.4
42
Minor BPS
62.7
0.4
1.3
63.08
37.5

Associated Gene:

Gene:
MYSM1
Ensembl Gene ID:
ENSAPLG00000006062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024440
28019437 - 28032981
13545
ENSAPLT00000022200
28019064 - 28033975
14912
ENSAPLT00000006334
28019437 - 28033975
14539
ENSAPLT00000032369
28019437 - 28032981
13545