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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28025187_28026169_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28025187 - 28026169
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TGATCTTTCACT
Flanking Amino Acid:
YQLAQRLQSMRTRRRRVRDP
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.7
34.4
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
78.6
0.64
0.9
73.2
37.2
Minor 5ss
45.2
-0.5
3.1
63.7
43
Minor BPS
66.7
0.61
1.7
81.48
40.1

Associated Gene:

Gene:
MYSM1
Ensembl Gene ID:
ENSAPLG00000006062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024440
28019437 - 28032981
13545
ENSAPLT00000022200
28019064 - 28033975
14912
ENSAPLT00000006334
28019437 - 28033975
14539
ENSAPLT00000032369
28019437 - 28032981
13545