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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28027232_28028158_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28027232 - 28028158
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTACTTTATTT
Flanking Amino Acid:
LKIRNYILDQWERCKPKYLN
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
79.7
0.67
0.8
78.3
34.5
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
61.3
0.43
1.6
76.03
41.4

Associated Gene:

Gene:
MYSM1
Ensembl Gene ID:
ENSAPLG00000006062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006334
28019437 - 28033975
14539
ENSAPLT00000032369
28019437 - 28032981
13545
ENSAPLT00000024440
28019437 - 28032981
13545
ENSAPLT00000022200
28019064 - 28033975
14912