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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28029866_28030544_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28029866 - 28030544
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
GCTAACTTCACT
Flanking Amino Acid:
EEKELFEQGLVKFGRRWTKI
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
73.2
38.4
Major BPS
68.7
0.46
1
71.3
34
Major PPT
65.2
0.34
1
58.7
41.8
Minor 5ss
50.3
0.01
2.4
63.2
42.8
Minor BPS
50.9
0.11
2
70.56
45.7

Associated Gene:

Gene:
MYSM1
Ensembl Gene ID:
ENSAPLG00000006062
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032369
28019437 - 28032981
13545
ENSAPLT00000024440
28019437 - 28032981
13545
ENSAPLT00000022200
28019064 - 28033975
14912
ENSAPLT00000006334
28019437 - 28033975
14539