Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28032831_28033844_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28032831 - 28033844

Intron Length:

1014

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGCGAC

5'SS Class:

major

3'SS Sequence:

TTATTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATTTTATTT

Flanking Amino Acid:

PAAAPGEGEPGEHESTASSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

62.8

38.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

93.1

0.97

0.7

92.4

Minor 5ss

30.7

-2.2

3.3

32.4

42.7

Minor BPS

61.8

0.45

1.6

79.69

Associated Gene:

Gene:

MYSM1

Ensembl Gene ID:

ENSAPLG00000006062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022200

28019064 - 28033975

14912

ENSAPLT00000006334

28019437 - 28033975

14539