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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28035594_28035977_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28035594 - 28035977
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
TGGTCAAGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTTATCTTAGTG
Flanking Amino Acid:
YGAAINALDNNLLQLLLHTN
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
66.4
39
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
63.7
0.31
1.1
59.7
45.1
Minor 5ss
34.7
-1.7
3.2
46.7
42.5
Minor BPS
60.6
0.19
1.7
67.63
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024240
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028836
28035544 - 28036602
1059