Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28058060_28058176_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28058060 - 28058176

Intron Length:

117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGAGGA

5'SS Class:

major

3'SS Sequence:

ACCATGTCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCATGAA

U12 Branch Point Sequence:

AGGTCATGAACC

Flanking Amino Acid:

CRKRKLERIASGCQLMLTQQ

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.2

58.2

41.2

Major BPS

62.9

0.32

1.1

53.9

41.5

Major PPT

0.25

54.2

39.7

Minor 5ss

24.8

-2.9

3.2

30.4

42.8

Minor BPS

54.6

0.12

1.8

64.29

40.4

Associated Gene:

Gene:

JUN

Ensembl Gene ID:

ENSAPLG00000028301

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023785

28058017 - 28059468

1452