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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28071249_28097316_F

Intron Information:

Intron Rank:
133484
Intron Class:
major
Intron Phase:
Intron Coordinates:
28071249 - 28097316
Intron Length:
26068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATATCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.7
40.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77
0.61
1
75.9
38.1
Minor 5ss
42.5
-0.8
2.9
60.1
44
Minor BPS
62.8
0.38
1.5
69.34
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021803
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018388
28071098 - 28113345
42248