About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28097398_28112870_F

Intron Information:

Intron Rank:
133485
Intron Class:
major
Intron Phase:
Intron Coordinates:
28097398 - 28112870
Intron Length:
15473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CACTGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTTTGCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77.7
0.62
0.9
68.5
41.8
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
52.1
0.14
2.2
77.81
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021803
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018388
28071098 - 28113345
42248