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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28308337_28312414_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28308337 - 28312414
Intron Length:
4078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTATTCTAACA
Flanking Amino Acid:
CASGDFASIQQDHWCLFLCK
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.4
0.66
0.8
77.7
31.2
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
49.9
-0
1.7
60.9
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030318
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037488
28304846 - 28337021
32176