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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28340152_28341236_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28340152 - 28341236
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCATATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CATAGTATAACT
Flanking Amino Acid:
NKRFSGQTRPFSDYLYDMPL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
91.2
27.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
69.4
0.44
0.9
67
38.6
Minor 5ss
42.1
-0.9
2.9
61.3
43
Minor BPS
47.2
-0.1
2
66.59
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005578
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005756
28339846 - 28351377
11532