About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28341909_28346331_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28341909 - 28346331
Intron Length:
4423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TTTTTTTTGATA
Flanking Amino Acid:
VETNCGHLFCGSCLITYWKH
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
84.9
0.78
0.8
84.2
30.9
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
74.5
0.76
1
81.02
27.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005578
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005756
28339846 - 28351377
11532