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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28346441_28351374_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28346441 - 28351374
Intron Length:
4934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTACTGAAGA
Flanking Amino Acid:
MESLQIWQPRN
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.3
0.77
0.8
81.3
30
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
55.9
0.18
1.9
72.05
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005578
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005756
28339846 - 28351377
11532