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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28367809_28369618_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28367809 - 28369618
Intron Length:
1810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCATCATTGAAT
Flanking Amino Acid:
GVAMAQVLHQIDVAWFDASW
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.1
0.65
0.9
75.3
38.6
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
57.6
0.32
1.8
74.46
41.9

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315