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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28369692_28370016_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28369692 - 28370016
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATAACCTTATCT
Flanking Amino Acid:
EDVGDNWRIKSSNLKKILQG
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
75.3
0.57
0.9
75.2
34.2
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
66.6
0.6
1.6
80.56
40.6

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315