Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28373972_28375008_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28373972 - 28375008

Intron Length:

1037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGCC

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTTTAAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TGTTCTTTAAAA

Flanking Amino Acid:

SDTSTEMEQQLKKALEDLQE

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

1.1

74.6

37.4

Major BPS

0.82

0.8

24.9

Major PPT

69.4

0.44

1.1

71.8

37.2

Minor 5ss

39.5

-1.2

3.1

53.7

43.5

Minor BPS

76.8

0.84

1.3

81.56

33.1

Associated Gene:

Gene:

HOOK1

Ensembl Gene ID:

ENSAPLG00000004631

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004883

28361159 - 28387473

26315