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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_28378073_28378637_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28378073 - 28378637
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GGATTCTTAATA
Flanking Amino Acid:
QLEQLQEENFRLEAAKDDYR
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.7
0.44
1
66.4
40.4
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
70
0.62
1.2
69.58
36.4

Associated Gene:

Gene:
HOOK1
Ensembl Gene ID:
ENSAPLG00000004631
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004883
28361159 - 28387473
26315