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Intron Name: Anas_platyrhynchos_platyrhynchos_8_28378779_28379553_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28378779 - 28379553

Intron Length:

775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATATAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTATTCTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TTATTCTTTAAG

Flanking Amino Acid:

RALKDENDILRATADKASKL

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

82.1

30.5

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

75.6

0.58

79.4

32.8

Minor 5ss

42.8

-0.8

2.7

59.2

45.4

Minor BPS

56.1

0.05

1.8

65.06

42.6

Associated Gene:

Gene:

HOOK1

Ensembl Gene ID:

ENSAPLG00000004631

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004883

28361159 - 28387473

26315